Laboratory for Control, Learning, and Systems Biology

theory of computing and complexity

2006
  1. B. Dasgupta, G.A. Enciso, E.D. Sontag, Y. Zhang, "Algorithmic and complexity results for decompositions of biological networks into monotone subsystems", In Lecture Notes in Computer Science: Experimental Algorithms: 5th International Workshop, WEA 2006, pp. 253–264, 2006.
    (Cala Galdana, Menorca, Spain, May 24-27, 2006)
  2. B. Dasgupta, P. Berman, E.D. Sontag, "Computational complexities of combinatorial problems with applications to reverse engineering of biological networks", In Advances in Computational Intelligence: Theory & Applications, pp. 303–316, 2006.
2004
  1. P. Kuusela, D. Ocone, E.D. Sontag, "Learning Complexity Dimensions for a Continuous-Time Control System", SIAM J. Control Optim., vol. 43, no. 3, pp. 872–898, 2004. doipdf
    Abstract

    This paper takes a computational learning theory approach to a problem of linear systems identification. It is assumed that input signals have only a finite number k of frequency components, and systems to be identified have dimension no greater than n. The main result establishes that the sample complexity needed for identification scales polynomially with n and logarithmically with k.

1993
  1. J. L. Balcázar, R. Gavaldà, H. T. Siegelmann, E.D. Sontag, "Some structural complexity aspects of neural computation", In Proceedings of the Eighth Annual Structure in Complexity Theory Conference (San Diego, CA, 1993), pp. 253–265, 1993. pdf
    Abstract

    Recent work by H.T. Siegelmann and E.D. Sontag (1992) has demonstrated that polynomial time on linear saturated recurrent neural networks equals polynomial time on standard computational models: Turing machines if the weights of the net are rationals, and nonuniform circuits if the weights are real. Here, further connections between the languages recognized by such neural nets and other complexity classes are developed. Connections to space-bounded classes, simulation of parallel computational models such as Vector Machines, and a discussion of the characterizations of various nonuniform classes in terms of Kolmogorov complexity are presented.

  2. A. Macintyre, E.D. Sontag, "Finiteness results for sigmoidal "neural" networks", In STOC '93: Proceedings of the twenty-fifth annual ACM symposium on Theory of computing, pp. 325–334, 1993. doipdf
    Abstract

    This paper deals with analog circuits. It establishes the finiteness of VC dimension, teaching dimension, and several other measures of sample complexity which arise in learning theory. It also shows that the equivalence of behaviors, and the loading problem, are effectively decidable, modulo a widely believed conjecture in number theory. The results, the first ones that are independent of weight size, apply when the gate function is the "standard sigmoid" commonly used in neural networks research. The proofs rely on very recent developments in the elementary theory of real numbers with exponentiation. (Some weaker conclusions are also given for more general analytic gate functions.) Applications to learnability of sparse polynomials are also mentioned.

1992
  1. H.T. Siegelmann, E.D. Sontag, C.L. Giles, "The Complexity of Language Recognition by Neural Networks", In Proceedings of the IFIP 12th World Computer Congress on Algorithms, Software, Architecture - Information Processing '92, Volume 1, pp. 329–335, 1992.
1991
  1. W. Maass, G. Schnitger, E.D. Sontag, "On the computational power of sigmoid versus Boolean threshold circuits (extended abstract)", In Proceedings of the 32nd annual symposium on Foundations of computer science, pp. 767–776, 1991.
1975
  1. E.D. Sontag, "On some questions of rationality and decidability", J. Comput. System Sci., vol. 11, no. 3, pp. 375–381, 1975. pdf
    Abstract

    Some results are given in the theory of rational power series over a broad class of semirings. In particular, it is shown that for unambiguous sets the notion of rationality is independent of the semiring over which representations are defined. The undecidability of the rationality of probabilistic word functions is also established.